Histomics

Histomics metadata file: histomics_metadata_table

• Objective of the file: contains cell density measurements

• Example format: histomics_metadata_table.parquet

• Requirements:

• Named histomics_metadata_table

• In parquet format

• slide_id as primary key

• Contains the mandatory columns in the table below

• File columns & description:

Name	Type	Mandatory	Description
patient_id	str	TRUE	Patient identifier

Other recommended columns:

'slide_id',
 'density_apoptotic_body_in_tumor',
 'density_cancer_cell_in_tumor',
 'density_cell_with_unknown_type_in_tumor',
 'density_endothelial_cell_in_tumor',
 'density_eosinophils_in_tumor',
 'density_fibroblasts_in_tumor',
 'density_lymphocytes_in_tumor',
 'density_macrophages_in_tumor',
 'density_mast_cell_in_tumor',
 'density_mitotic_figures_in_tumor',
 'density_neutrophils_in_tumor',
 'density_plasmocytes_in_tumor',
 'density_red_blood_cell_in_tumor',
 'density_smooth_muscle_cell_in_tumor'